You can use Ionic Isapi Rewrite* module with IIS web server. IIS is the default (commercial) web server for windows hosting. Verify that your website hosting company offer you such a module (it's free). Here is a relative article on Elxis Wiki: http://wiki.elxis.org/wiki/Ionic_Isapi_Rewrite_and_SEO_PRO_on_Windows_IIS*Ionic's Isapi Rewrite Filter, aka IIRF, is a small, FREE, easy to use, URL rewriting ISAPI filter. It combines a good price (free!) with good features. It is fast and powerful. It works on IIS 6.0, and later.
Off course SEO PRO works under windows. I use Elxis every day under windows with all the features fully functional.It is almost certain that you haven't enable properly URL rewrite in your apache.Make sure the module is loaded, exists and the line in not commented:LoadModule rewrite_module modules/mod_rewrite.so (it can be different in your computer)In your vhosts make sure the following exists and it is not commented: AllowOverride AllAfter you change an apache configuration variable restart it!